supervised_phenotype_scoring
User Guide
Usage Guide
API Reference
family_spec_generation
prepare_batch
export_batch
prescreen_app
run_pipeline
ranking_app
analyze_rankings
printout_generator
upload_batch
make_test_batch
supervised_phenotype_scoring
Index
Index
A
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B
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C
|
E
|
F
|
G
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K
|
L
|
M
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N
|
P
|
R
|
S
|
T
|
U
|
W
A
analyze_one_trait() (in module analyze_rankings)
analyze_rankings
module
B
bandpass() (in module family_spec_generation)
bird_averages() (in module analyze_rankings)
build_answer_key() (in module printout_generator)
build_bird_page() (in module printout_generator)
build_session_pool() (in module ranking_app)
build_spectrogram_pipeline() (in module family_spec_generation)
C
collect_flagged_uids() (in module analyze_rankings)
compute_elo() (in module analyze_rankings)
compute_irr() (in module analyze_rankings)
compute_rank_consistency() (in module analyze_rankings)
compute_snippet() (in module prepare_batch)
create_app() (in module prescreen_app)
(in module ranking_app)
E
ensure_plotly() (in module ranking_app)
ensure_sortable() (in module ranking_app)
expand_bird_aliases() (in module family_spec_generation)
expected_score() (in module analyze_rankings)
export_audio() (in module export_batch)
export_batch
module
F
family_spec_generation
module
find_latest_batch_dir() (in module run_pipeline)
find_prescreen_csv() (in module run_pipeline)
flag_fast_rounds() (in module analyze_rankings)
G
get_audio_duration() (in module prepare_batch)
get_s3_client() (in module upload_batch)
get_session() (in module ranking_app)
K
kendall_tau() (in module analyze_rankings)
L
load_batch() (in module prescreen_app)
(in module ranking_app)
load_bird_registry() (in module prepare_batch)
load_birds_from_txt() (in module family_spec_generation)
load_config() (in module prepare_batch)
load_exclude_set() (in module prepare_batch)
load_existing_batch() (in module prepare_batch)
load_existing_labels() (in module prescreen_app)
load_pairings() (in module run_pipeline)
load_previously_flagged() (in module ranking_app)
load_sessions() (in module analyze_rankings)
load_song_results() (in module family_spec_generation)
M
main() (in module analyze_rankings)
(in module export_batch)
(in module family_spec_generation)
(in module make_test_batch)
(in module prepare_batch)
(in module prescreen_app)
(in module printout_generator)
(in module ranking_app)
(in module run_pipeline)
(in module upload_batch)
make_bird_list() (in module make_test_batch)
make_song_spectrogram() (in module family_spec_generation)
make_test_batch
module
module
analyze_rankings
export_batch
family_spec_generation
make_test_batch
prepare_batch
prescreen_app
printout_generator
ranking_app
run_pipeline
upload_batch
N
new_scoring_session() (in module ranking_app)
next_batch() (in module ranking_app)
P
phase1() (in module run_pipeline)
phase2() (in module run_pipeline)
plan_snippets() (in module prepare_batch)
plot_bird_elo() (in module analyze_rankings)
plot_rank_consistency() (in module analyze_rankings)
plot_scorer_agreement() (in module analyze_rankings)
plot_segmentation_summary() (in module family_spec_generation)
plot_snippet_elo() (in module analyze_rankings)
prepare_batch
module
prescreen_app
module
prescreen_csv_path() (in module prescreen_app)
printout_generator
module
process_one_file() (in module family_spec_generation)
R
ranking_app
module
ranking_to_pairs() (in module analyze_rankings)
read_audio_file() (in module family_spec_generation)
read_spec_from_h5() (in module prescreen_app)
read_uid_list() (in module upload_batch)
resolve_audio_path() (in module family_spec_generation)
role_summary() (in module analyze_rankings)
run() (in module run_pipeline)
run_pipeline
module
S
safe_basename() (in module family_spec_generation)
save_session_to_disk() (in module ranking_app)
score_song_candidate() (in module family_spec_generation)
scorer_ranking() (in module analyze_rankings)
segment_notes() (in module family_spec_generation)
smooth_envelope() (in module family_spec_generation)
spectrogram_for_plot() (in module family_spec_generation)
synthetic_audio() (in module make_test_batch)
synthetic_freq_axis() (in module make_test_batch)
synthetic_spec() (in module make_test_batch)
T
today_batch_dir() (in module run_pipeline)
U
update_elo() (in module analyze_rankings)
upload_batch
module
upload_directory() (in module upload_batch)
upload_file() (in module upload_batch)
upload_manifest() (in module upload_batch)
W
write_batch() (in module make_test_batch)
write_consistency_csv() (in module analyze_rankings)
write_csv() (in module analyze_rankings)
write_fake_sessions() (in module make_test_batch)
write_flagged_csv() (in module analyze_rankings)
write_hdf5() (in module prepare_batch)
write_hosted_config() (in module upload_batch)
write_labels_csv() (in module prescreen_app)
write_public_manifest() (in module export_batch)
write_summary() (in module analyze_rankings)