song_phenotyping
================

Automated pipeline for phenotyping Bengalese finch song.

``song_phenotyping`` segments, embeds, clusters, and characterises syllable
repertoires from raw audio recordings.  It supports two annotation formats
(evsonganaly and wseg) and produces standardised phenotype tables suitable for
statistical comparison across birds and conditions.

.. toctree::
   :maxdepth: 2
   :caption: Getting started

   installation
   usage

.. toctree::
   :maxdepth: 2
   :caption: API reference

   api/index
   api/ingestion
   api/flattening
   api/embedding
   api/labelling
   api/phenotyping
   api/catalog
   api/slicing
   api/tools